Anatomy Ontologies for Bioinformatics: Principles and by Jonathan Bard (auth.), Albert Burger BSc, MSc, PhD, Duncan PDF

By Jonathan Bard (auth.), Albert Burger BSc, MSc, PhD, Duncan Davidson BSc, PhD, Richard Baldock BSc, PhD (eds.)

ISBN-10: 1846288843

ISBN-13: 9781846288845

ISBN-10: 1846288851

ISBN-13: 9781846288852

Bioinformatics as a self-discipline has come of age, and there at the moment are a number of databases and instruments which are common by means of researchers within the biomedical box. in spite of the fact that, profitable improvement of destiny bioinformatics functions relies on an effectively formalised illustration of area knowledge.

This ebook presents a well timed and first-of-its-kind selection of contributed chapters on anatomy ontologies. it truly is interdisciplinary in its technique, bringing jointly appropriate services from computing and biomedical reviews, and masking either theoretical and utilized points, with an emphasis on more moderen paintings proper to the rising Semantic Web.

Topics and Features:

• presents a finished dialogue of the principles of anatomical ontologies and the cutting-edge in current computational instruments and applications

• Considers a few basic modelling principles

• comprises chapters approximately study on algorithms to systematically align anatomy ontologies and to mine information within the literature, utilizing anatomy terms

• Explains fresh efforts to improve a typical anatomy reference ontology

• Discusses anatomy within the context of spatio-temporal biomedical atlases

• Describes structures and instruments for linking anatomy ontologies with one another and with different online assets, comparable to the biomedical literature

• Highlights the demanding situations of facing anatomy-based details at the Semantic Web

Although essentially written for readers who may be concerned about constructing the subsequent new release of IT functions within the parts of lifestyles sciences, biomedical sciences and health and wellbeing care, this exact quantity might be of curiosity to somebody who will extra boost anatomy ontologies, who will use them, and who could be serious about the particular improvement of suitable (semantic) net applications.

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Extra info for Anatomy Ontologies for Bioinformatics: Principles and Practice

Sample text

Mueller, S. Mundodi, L. Reiser, J. C. Weems, Y. Wu, I. Xu, D. Yoo, J. Yoon, and P. Zhang. The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res, 31:224–228, 2003. 42 Katica Ilic, Seung Y. Rhee, Elizabeth A. Kellogg and Peter F. Stevens 21. C. Rosse, A. L. L. T. Detwiler, and B. Smith. A strategy for improving and integrating biomedical ontologies. , pages 639–643, 2005.

Smith, W. Ceusters, B. Klagges, J. Kohler, A. Kumar, J. Lomax, C. Mungall, F. L. Rector, and C. Rosse. Relations in biomedical ontologies. Genome Biol, 6(R46), 2005. 23. B. Smith, J. Williams, and S. Schulze-Kremer. The ontology of the gene ontology. In AMIA Annu Symp Proc, pages 609–613, 2003. 24. J. Sprague, L. Bayraktaroglu, D. Clements, T. Conlin, D. Fashena, K. Frazer, M. G. Howe, P. Mani, S. Ramachandran, K. Schaper, E. Segerdell, P. Song, B. Sprunger, S. E. Van Slyke, and M. Westerfield. The Zebrafish Information Network: the zebrafish model organism database.

C. Rosse, A. L. L. T. Detwiler, and B. Smith. A strategy for improving and integrating biomedical ontologies. , pages 639–643, 2005. 22. B. Smith, W. Ceusters, B. Klagges, J. Kohler, A. Kumar, J. Lomax, C. Mungall, F. L. Rector, and C. Rosse. Relations in biomedical ontologies. Genome Biol, 6(R46), 2005. 23. B. Smith, J. Williams, and S. Schulze-Kremer. The ontology of the gene ontology. In AMIA Annu Symp Proc, pages 609–613, 2003. 24. J. Sprague, L. Bayraktaroglu, D. Clements, T. Conlin, D. Fashena, K.

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Anatomy Ontologies for Bioinformatics: Principles and Practice by Jonathan Bard (auth.), Albert Burger BSc, MSc, PhD, Duncan Davidson BSc, PhD, Richard Baldock BSc, PhD (eds.)


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